Dataset Browser

Showing 35 out of 35 datasets

Dataset	Patients	MX Images	Type	Modalities	Primary Cancer
allam2022spatially Spatially variant immune infiltration scoring in human cancer tissues	26	26	ROI	IMC	Lung
bowen2023naproxen Naproxen chemoprevention induces proliferation of cytotoxic lymphocytes in Lynch Syndrome colorectal mucosa	18	58	ROI	IMC	Other disease
cho2025modeling Modeling cellular influence delineates functionally relevant cellular neighborhoods in primary and metastatic pancreatic ductal adenocarcinoma	12	58	ROI	IMC	Pancreatic
cords2023cancer Cancer-associated fibroblast classification in single-cell and spatial proteomics data	12	109	ROI	IMC	Breast
cords2024cancer Cancer-associated fibroblast phenotypes are associated with patient outcome in non-small cell lung cancer	1,361	2,040	ROI	IMC H&E	Lung
damond2019map A map of human type 1 diabetes progression by imaging mass cytometry	12	845	ROI	IMC	Other disease
danenberg2022breast Breast tumor microenvironment structures are associated with genomic features and clinical outcome	718	794	ROI	IMC	Breast
ehret2025shaking Shaking organoid co-cultures: human-relevant models of epithelial, stromal and immune interactions for cancer research and immunotherapy development	55	108	ROI	IMC	Colorectal
fischer2023multiplex Multiplex imaging of breast cancer lymph node metastases identifies prognostic single-cell populations independent of clinical classifiers	892	1,252	ROI	IMC	Breast
greenwald2026temporal Temporal and spatial composition of the tumor microenvironment predicts response to immune checkpoint inhibition in metastatic TNBC	113	1,258	ROI	MIBI	Breast
gupta2026single Single-cell spatial atlas of the aging human breast	527	1,492	ROI	IMC	No disease
haist2026lymph Lymph node colonization induces tissue remodeling via immunosuppressive fibroblast-myeloid cell niches supporting metastatic tolerance	79	389	ROI	CODEX H&E	Head & neck
hickey2023organization Organization of the human intestine at single-cell resolution	8	64	WSI	CODEX H&E	Other disease
hoefflin2026spatial Spatial analysis reveals the evolving organization of low-grade and high-grade IDH-mutant glioma	25	30	WSI	CODEX H&E	Brain
hoch2022multiplexed Multiplexed imaging mass cytometry of the chemokine milieus in melanoma characterizes features of the response to immunotherapy	35	50	ROI	IMC	Skin (melanoma)
hu2023single Single-cell spatial metabolomics with cell-type specific protein profiling for tissue systems biology	12	51	ROI	IMC	Lung
hubmap2019human Human BioMolecular Atlas Program (HuBMAP): 3D human reference atlas construction and usage	15	80	WSI	CODEX	Other disease
jackson2020single The single-cell pathology landscape of breast cancer	285	723	ROI	IMC	Breast
klein2026explainable Explainable AI-based analysis of human pancreas sections identifies traits of type 2 diabetes	100	400	WSI	IF	Other disease
lin2022multiplexed Multiplexed 3D atlas of state transitions and immune interaction in colorectal cancer	6	13	WSI	CODEX	Colorectal
lin2023high High-plex immunofluorescence imaging and traditional histology of the same tissue section for discovering image-based biomarkers	40	41	WSI	Orion H&E	Colorectal
liu2022reproducible Reproducible, high-dimensional imaging in archival human tissue by multiplexed ion beam imaging by time-of-flight (MIBI-TOF)	28	164	ROI	MIBI	Breast, Colorectal
malchiodi2024natural Natural killer cells associate with epithelial cells in the pancreatic ductal adenocarcinoma tumor microenvironment.	63	164	ROI	IMC	Pancreatic, Other disease
meyer2025stratification A stratification system for breast cancer based on basoluminal tumor cells and spatial tumor architecture	215	450	ROI	IMC	Breast
moldoveanu2022spatially Spatially mapping the immune landscape of melanoma using imaging mass cytometry	90	90	ROI	IMC	Skin (melanoma)
monkman2024spatial Spatial insights into immunotherapy response in non-small cell lung cancer (NSCLC) by multiplexed tissue imaging	42	42	ROI	CODEX	Lung
phillips2021immune Immune cell topography predicts response to PD-1 blockade in cutaneous T cell lymphoma	14	70	ROI	CODEX H&E	Lymphoma
rigamonti2024integrating Integrating AI-powered digital pathology and imaging mass cytometry identifies key classifiers of tumor cells, stroma, and immune cells in non-small cell lung cancer	108	158	ROI	IMC H&E	Lung
ruf2023tumor Tumor-associated macrophages trigger MAIT cell dysfunction at the HCC invasive margin	17	17	WSI	CODEX	Liver
salie2025spatial Spatial single-cell profiling and neighbourhood analysis reveal the determinants of immune architecture connected to checkpoint inhibitor therapy outcome in hepatocellular carcinoma	96	194	ROI	IMC	Liver
schulz2018simultaneous Simultaneous multiplexed imaging of mRNA and proteins with subcellular resolution in breast cancer tissue samples by mass cytometry	79	79	ROI	IMC	Breast
schulz2024immucan Multi-modal image analysis for large-scale cancer tissue studies within IMMUcan	179	179	ROI	IMC	Colorectal, Lung, Head & neck, Breast
schurch2020coordinated Coordinated cellular neighborhoods orchestrate antitumoral immunity at the colorectal cancer invasive front	35	251	ROI	CODEX H&E	Colorectal
xiao2022multiplexed Multiplexed imaging mass cytometry reveals distinct tumor-immune microenvironments linked to immunotherapy responses in melanoma	26	158	WSI	IMC	Skin (melanoma)
zhuhuman2025spatial Spatial and multiomics analysis of human and mouse lung adenocarcinoma precursors reveals TIM-3 as a putative target for precancer interception	62	1,649	ROI	IMC	Lung

[spora]

Dataset download commands

Dataset citation